Search for: All records

Abstract The SPECFEM3D_Cartesian code package is widely used in simulating seismic wave propagation on local and regional scales due to its computational efficiency compared with the one-chunk version of the SPECFEM3D_Globe code. In SPECFEM3D_Cartesian, the built-in meshing tool maps a spherically curved cube to a rectangular cube using the Universal Transverse Mercator projection (UTM). Meanwhile, the geodetic east, north, and up directions are assigned as the local x–y–z directions. This causes coordinate orientation issues in simulating waveform propagation in regions larger than 6° × 6° or near the Earth’s polar regions. In this study, we introduce a new code package, named Cartesian Meshing Spherical Earth (CMSE), that can accurately mesh the 3D geometry of the Earth’s surface under the Cartesian coordinate frame, while retaining the geodetic directions. To benchmark our new package, we calculate the residual amplitude of the CMSE synthetics with respect to the reference synthetics calculated by SPECFEM3D_Globe. In the regional scale simulations with an area of 1300 km × 1300 km, we find a maximum of 5% amplitude residual for the SPECFEM3D_Cartesian synthetics using the mesh generated by the CMSE, much smaller than the maximum amplitude residual of 100% for the synthetics based on its built-in meshing tool. Therefore, our new meshing tool CMSE overcomes the limitations of the internal mesher used by SPECFEM3D_Cartesian and can be used for more accurate waveform simulations in larger regions beyond one UTM zone. Furthermore, CMSE can deal with regions at the south and north poles that cannot be handled by the UTM projection. Although other external code packages can be used to mesh the curvature of the Earth, the advantage of the CMSE code is that it is open-source, easy to use, and fully integrated with SPECFEM3D_Cartesian. 

The Electron Microscopy Data Bank (EMDB) is the global public archive of three-dimensional electron microscopy (3DEM) maps of biological specimens derived from transmission electron microscopy experiments. As of 2021, EMDB is managed by the Worldwide Protein Data Bank consortium (wwPDB; wwpdb.org) as a wwPDB Core Archive, and the EMDB team is a core member of the consortium. Today, EMDB houses over 30 000 entries with maps containing macromolecules, complexes, viruses, organelles and cells. Herein, we provide an overview of the rapidly growing EMDB archive, including its current holdings, recent updates, and future plans.

 

Accurate seismic images of the crust are essential for assessing seismic hazards and elucidating tectonic processes that shape surface landforms. Although California and Nevada have been studied extensively using various seismic datasets and tomographic methods, the region lacks a seismic model that can accurately define both the shallow (<8 km) and deeper crust. We take the advantage of recent increases in seismic data coverage to build a new 3D shear wave speed model by jointly inverting Rayleigh wave ellipticity, phase velocity, and teleseismic P waveforms. In the Great Valley, the new model reveals an asymmetric basement, steeply dipping in the west and gently dipping in the east. Beneath its western margin, in the Coast Ranges, we resolve a wedge‐shaped, low‐velocity zone in the upper‐middle crust, interpreted as Franciscan Complex. Our images confirm that uplift of the western Great Valley and an eastward shift of its depositional center are caused by wedging and underthrusting of the complex during subduction. Across the Basin and Range, the resolved crust has an average thickness of 38 km in the southern half of the northern Basin and Range, about 5 km thicker than neighboring regions. The thickened crust overlaps with major volcanic centers of the mid‐Cenozoic ignimbrite flare‐up. This spatial correlation may suggest magmatic intrusions and underplating contributed to crustal growth and thickening prior to Miocene Basin and Range extension. Overall, the new model is consistent with active source studies in the region but provides a more comprehensive view of shallow and deep structures across this large and tectonically complex region.